What is the difference between a Cap Liner and a Cap Septum - FAQ
May 21, 2021
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21-MAY-2021   Last Updated: 20-JUNE-2025

In chromatography and laboratory vial systems, cap liners and cap septa serve different purposes, even though they may appear similar in material or thickness.

Cap Liner

  • A liner is typically installed in a solid-top cap (i.e., a cap without a hole).
  • It cannot be pierced and is not designed for needle access.
  • Its primary function is to seal the vial, preventing sample evaporation or contamination during storage or transport.
  • Liners may be made from materials such as PTFE, silicone, or polyethylene, and are selected based on chemical compatibility.

Cap Septum

  • A septum (plural: septa) is installed in an open-top cap, which has a hole to allow needle access.
  • It is designed to be pierced by an autosampler needle or syringe during sample injection.
  • After piercing, the septum reseals itself, maintaining vial integrity and minimizing exposure to air or contaminants.
  • Septa are often made from layered materials (e.g., PTFE/silicone) to balance chemical resistance and resealability.

🔍 Fun Fact: The term septum comes from Latin, meaning “a wall” or “partition.” In chromatography, it acts as a barrier that protects the sample until it's accessed.

Why It Matters

  • Using the correct closure type is essential for sample integrity, instrument compatibility, and analytical accuracy.
  • Always match the cap type (solid or open-top) with the appropriate liner or septum based on your application—whether for storage or injection.

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